Detailed information of SNP:
|
SNP ID:
sf0218084026(Gbrowse)
Chromosome: chr02 Position: 18084026 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.13% | 22.87% |
| All Indica | 797 | 76.54% | 23.46% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 75.07% | 24.93% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218084026 | C->G | INTERGENIC | None |