Detailed information of SNP:
|
SNP ID:
sf0218094761(Gbrowse)
Chromosome: chr02 Position: 18094761 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 54.97% | 45.03% |
| All Indica | 733 | 74.90% | 25.10% |
| All Japonica | 495 | 22.02% | 77.98% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 341 | 77.71% | 22.29% |
| Indica II | 200 | 77.50% | 22.50% |
| Indica Intermediate | 192 | 67.19% | 32.81% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218094761 | C->T | LOC_Os02g30390(LOC_Os02g30390.1) | Synonymous |