Detailed information of SNP:
|
SNP ID:
sf0218096129(Gbrowse)
Chromosome: chr02 Position: 18096129 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 56.66% | 43.34% |
| All Indica | 777 | 27.03% | 72.97% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 368 | 29.08% | 70.92% |
| Indica II | 208 | 37.50% | 62.50% |
| Indica Intermediate | 201 | 12.44% | 87.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218096129 | G->T | LOC_Os02g30390(LOC_Os02g30390.1) | Synonymous |