Detailed information of SNP:
|
SNP ID:
sf0218100789(Gbrowse)
Chromosome: chr02 Position: 18100789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1249 | 62.93% | 37.07% |
| All Indica | 639 | 57.75% | 42.25% |
| All Japonica | 495 | 78.79% | 21.21% |
| Aus | 63 | 14.29% | 85.71% |
| Indica I | 292 | 60.27% | 39.73% |
| Indica II | 178 | 48.88% | 51.12% |
| Indica Intermediate | 169 | 62.72% | 37.28% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218100789 | C->T | LOC_Os02g30400(LOC_Os02g30400.1) | Non-Synonymous SNP |