Detailed information of SNP:
|
SNP ID:
sf0218147887(Gbrowse)
Chromosome: chr02 Position: 18147887 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1327 | 89.22% | 10.78% |
| All Indica | 716 | 82.12% | 17.88% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 337 | 81.01% | 18.99% |
| Indica II | 195 | 85.64% | 14.36% |
| Indica Intermediate | 184 | 80.43% | 19.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218147887 | A->G | INTERGENIC | None |