Detailed information of SNP:
|
SNP ID:
sf0218150959(Gbrowse)
Chromosome: chr02 Position: 18150959 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1250 | 68.32% | 31.68% |
| All Indica | 653 | 44.72% | 55.28% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 57 | 54.39% | 45.61% |
| Indica I | 296 | 31.08% | 68.92% |
| Indica II | 182 | 68.13% | 31.87% |
| Indica Intermediate | 175 | 43.43% | 56.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218150959 | G->A | LOC_Os02g30510(LOC_Os02g30510.1) | INTRON |