Detailed information of SNP:
|
SNP ID:
sf0218152224(Gbrowse)
Chromosome: chr02 Position: 18152224 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 97.64% | 2.36% |
| All Indica | 788 | 97.72% | 2.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218152224 | A->T | LOC_Os02g30510(LOC_Os02g30510.1) | Non-Synonymous SNP |