Detailed information of SNP:
|
SNP ID:
sf0218173494(Gbrowse)
Chromosome: chr02 Position: 18173494 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 90.18% | 9.82% |
| All Indica | 788 | 90.74% | 9.26% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218173494 | A->G | INTERGENIC | None |