Detailed information of SNP:
|
SNP ID:
sf0218179110(Gbrowse)
Chromosome: chr02 Position: 18179110 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218179110 | A->G | INTERGENIC | None |