Detailed information of SNP:
|
SNP ID:
sf0218241034(Gbrowse)
Chromosome: chr02 Position: 18241034 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 90.74% | 9.26% |
| All Indica | 791 | 96.97% | 3.03% |
| All Japonica | 492 | 80.49% | 19.51% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 21.35% | 78.65% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218241034 | G->T | INTERGENIC | None |