Detailed information of SNP:
|
SNP ID:
sf0218255225(Gbrowse)
Chromosome: chr02 Position: 18255225 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 61.52% | 38.48% |
| All Indica | 754 | 33.42% | 66.58% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 350 | 36.29% | 63.71% |
| Indica II | 208 | 40.38% | 59.62% |
| Indica Intermediate | 196 | 20.92% | 79.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218255225 | C->G | INTERGENIC | None |