Detailed information of SNP:
|
SNP ID:
sf0218314859(Gbrowse)
Chromosome: chr02 Position: 18314859 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 93.63% | 6.37% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 462 | 83.33% | 16.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 71 | 25.35% | 74.65% |
| Japonica Intermediate | 56 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218314859 | G->A | LOC_Os02g30740(LOC_Os02g30740.1) | INTRON |