Detailed information of SNP:
|
SNP ID:
sf0218315129(Gbrowse)
Chromosome: chr02 Position: 18315129 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 89.30% | 10.70% |
| All Indica | 743 | 84.66% | 15.34% |
| All Japonica | 452 | 96.02% | 3.98% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 345 | 88.41% | 11.59% |
| Indica II | 197 | 79.19% | 20.81% |
| Indica Intermediate | 201 | 83.58% | 16.42% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 66 | 78.79% | 21.21% |
| Japonica Intermediate | 54 | 94.44% | 5.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218315129 | C->T | LOC_Os02g30740(LOC_Os02g30740.1) | Synonymous |