Detailed information of SNP:
|
SNP ID:
sf0218315144(Gbrowse)
Chromosome: chr02 Position: 18315144 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1154 | 84.49% | 15.51% |
| All Indica | 543 | 67.77% | 32.23% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 235 | 64.26% | 35.74% |
| Indica II | 172 | 77.91% | 22.09% |
| Indica Intermediate | 136 | 61.03% | 38.97% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218315144 | G->C | LOC_Os02g30740(LOC_Os02g30740.1) | Non-Synonymous SNP |