Detailed information of SNP:
|
SNP ID:
sf0218324646(Gbrowse)
Chromosome: chr02 Position: 18324646 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 71.48% | 28.52% |
| All Indica | 781 | 51.22% | 48.78% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 56.87% | 43.13% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 205 | 43.41% | 56.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218324646 | G->A | LOC_Os02g30770(LOC_Os02g30770.1) | Non-Synonymous SNP |