Detailed information of SNP:
|
SNP ID:
sf0218337030(Gbrowse)
Chromosome: chr02 Position: 18337030 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.11% | 14.89% |
| All Indica | 797 | 80.80% | 19.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218337030 | C->T | INTERGENIC | None |