Detailed information of SNP:
|
SNP ID:
sf0218344846(Gbrowse)
Chromosome: chr02 Position: 18344846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 94.27% | 5.73% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 475 | 84.42% | 15.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 80 | 23.75% | 76.25% |
| Japonica Intermediate | 61 | 83.61% | 16.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218344846 | G->A | LOC_Os02g30800(LOC_Os02g30800.1) | INTRON |