Detailed information of SNP:
|
SNP ID:
sf0218373138(Gbrowse)
Chromosome: chr02 Position: 18373138 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 67.72% | 32.28% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 26.36% | 73.64% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218373138 | G->A | INTERGENIC | None |