Detailed information of SNP:
|
SNP ID:
sf0218426834(Gbrowse)
Chromosome: chr02 Position: 18426834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 92.67% | 7.33% |
| All Indica | 745 | 87.65% | 12.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 347 | 85.59% | 14.41% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 194 | 86.08% | 13.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218426834 | C->T | INTERGENIC | None |