Detailed information of SNP:
|
SNP ID:
sf0218445364(Gbrowse)
Chromosome: chr02 Position: 18445364 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218445364 | T->A | INTERGENIC | None |