Detailed information of SNP:
|
SNP ID:
sf0218449218(Gbrowse)
Chromosome: chr02 Position: 18449218 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.76% | 31.24% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218449218 | A->G | LOC_Os02g30910(LOC_Os02g30910.1) | Non-Synonymous SNP |