Detailed information of SNP:
|
SNP ID:
sf0218449921(Gbrowse)
Chromosome: chr02 Position: 18449921 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.62% | 11.38% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 494 | 81.78% | 18.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 77.78% | 22.22% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218449921 | G->T | LOC_Os02g30910(LOC_Os02g30910.1) | INTRON |