Detailed information of SNP:
|
SNP ID:
sf0218453413(Gbrowse)
Chromosome: chr02 Position: 18453413 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 98.89% | 1.11% |
| All Indica | 772 | 100.00% | 0.00% |
| All Japonica | 468 | 96.79% | 3.21% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 188 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 97.74% | 2.26% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218453413 | G->A | INTERGENIC | None |