Detailed information of SNP:
|
SNP ID:
sf0218464433(Gbrowse)
Chromosome: chr02 Position: 18464433 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 70.13% | 29.87% |
| All Indica | 793 | 48.93% | 51.07% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 51.21% | 48.79% |
| Indica II | 212 | 49.53% | 50.47% |
| Indica Intermediate | 210 | 44.29% | 55.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218464433 | C->T | LOC_Os02g30920(LOC_Os02g30920.1) | INTRON |