Detailed information of SNP:
|
SNP ID:
sf0218466263(Gbrowse)
Chromosome: chr02 Position: 18466263 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.65% | 44.35% |
| All Indica | 797 | 46.17% | 53.83% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218466263 | T->C | INTERGENIC | None |