Detailed information of SNP:
|
SNP ID:
sf0218482837(Gbrowse)
Chromosome: chr02 Position: 18482837 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 89.44% | 10.56% |
| All Indica | 774 | 81.78% | 18.22% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 203 | 66.50% | 33.50% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218482837 | G->A | INTERGENIC | None |