Detailed information of SNP:
|
SNP ID:
sf0218485549(Gbrowse)
Chromosome: chr02 Position: 18485549 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 68.41% | 31.59% |
| All Indica | 795 | 47.92% | 52.08% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 211 | 49.29% | 50.71% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218485549 | G->A | LOC_Os02g30950(LOC_Os02g30950.1) | INTRON |