Detailed information of SNP:
|
SNP ID:
sf0218493613(Gbrowse)
Chromosome: chr02 Position: 18493613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 89.77% | 10.23% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 490 | 80.41% | 19.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 80.38% | 19.62% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 76.67% | 23.33% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218493613 | C->T | INTERGENIC | None |