Detailed information of SNP:
|
SNP ID:
sf0218513475(Gbrowse)
Chromosome: chr02 Position: 18513475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 99.18% | 0.82% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 426 | 97.65% | 2.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 47 | 78.72% | 21.28% |
| Japonica Intermediate | 48 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218513475 | C->T | INTERGENIC | None |