Detailed information of SNP:
|
SNP ID:
sf0218531935(Gbrowse)
Chromosome: chr02 Position: 18531935 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1335 | 89.51% | 10.49% |
| All Indica | 719 | 81.36% | 18.64% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 92.69% | 7.31% |
| Indica II | 189 | 62.43% | 37.57% |
| Indica Intermediate | 188 | 79.79% | 20.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218531935 | C->G | LOC_Os02g31030(LOC_Os02g31030.1) | INTRON |
| sf0218531935 | C->G | LOC_Os02g31030(LOC_Os02g31030.2) | INTRON |