Detailed information of SNP:
|
SNP ID:
sf0218561360(Gbrowse)
Chromosome: chr02 Position: 18561360 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 93.39% | 6.61% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 411 | 79.08% | 20.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 68.77% | 31.23% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218561360 | T->C | LOC_Os02g31070(LOC_Os02g31070.2) | INTRON |
| sf0218561360 | T->C | LOC_Os02g31070(LOC_Os02g31070.1) | INTRON |
| sf0218561360 | T->C | LOC_Os02g31070(LOC_Os02g31070.4) | INTRON |
| sf0218561360 | T->C | LOC_Os02g31070(LOC_Os02g31070.3) | INTRON |