Detailed information of SNP:
|
SNP ID:
sf0218563361(Gbrowse)
Chromosome: chr02 Position: 18563361 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 98.63% | 1.37% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 470 | 96.17% | 3.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 94.87% | 5.13% |
| Japonica Intermediate | 57 | 75.44% | 24.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218563361 | G->T | INTERGENIC | None |