Detailed information of SNP:
|
SNP ID:
sf0218585356(Gbrowse)
Chromosome: chr02 Position: 18585356 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 68.96% | 31.04% |
| All Japonica | 497 | 17.91% | 82.09% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218585356 | T->C | INTERGENIC | None |