Detailed information of SNP:
|
SNP ID:
sf0218602270(Gbrowse)
Chromosome: chr02 Position: 18602270 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 98.00% | 2.00% |
| All Indica | 794 | 98.36% | 1.64% |
| All Japonica | 483 | 97.10% | 2.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 83.95% | 16.05% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218602270 | T->G | LOC_Os02g31120(LOC_Os02g31120.1) | INTRON |