Detailed information of SNP:
|
SNP ID:
sf0218602707(Gbrowse)
Chromosome: chr02 Position: 18602707 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.64% | 36.36% |
| All Indica | 799 | 59.07% | 40.93% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218602707 | C->T | LOC_Os02g31120(LOC_Os02g31120.1) | INTRON |