Detailed information of SNP:
|
SNP ID:
sf0218604325(Gbrowse)
Chromosome: chr02 Position: 18604325 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.73% | 40.27% |
| All Indica | 798 | 41.85% | 58.15% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 49.47% | 50.53% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218604325 | A->G | INTERGENIC | None |