Detailed information of SNP:
|
SNP ID:
sf0218616279(Gbrowse)
Chromosome: chr02 Position: 18616279 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 83.98% | 16.02% |
| All Indica | 798 | 75.31% | 24.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 70.32% | 29.68% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218616279 | T->C | INTERGENIC | None |