Detailed information of SNP:
|
SNP ID:
sf0218618221(Gbrowse)
Chromosome: chr02 Position: 18618221 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 797 | 48.06% | 51.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 209 | 46.41% | 53.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218618221 | G->A | INTERGENIC | None |