Detailed information of SNP:
|
SNP ID:
sf0218627757(Gbrowse)
Chromosome: chr02 Position: 18627757 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.27% | 19.73% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218627757 | T->C | INTERGENIC | None |