Detailed information of SNP:
|
SNP ID:
sf0218629708(Gbrowse)
Chromosome: chr02 Position: 18629708 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 82.53% | 17.47% |
| All Indica | 796 | 80.78% | 19.22% |
| All Japonica | 495 | 87.88% | 12.12% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 210 | 70.95% | 29.05% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218629708 | G->A | INTERGENIC | None |