Detailed information of SNP:
|
SNP ID:
sf0218636913(Gbrowse)
Chromosome: chr02 Position: 18636913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 81.65% | 18.35% |
| All Indica | 796 | 82.91% | 17.09% |
| All Japonica | 477 | 81.34% | 18.66% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 317 | 75.71% | 24.29% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218636913 | G->A | INTERGENIC | None |