Detailed information of SNP:
|
SNP ID:
sf0218677575(Gbrowse)
Chromosome: chr02 Position: 18677575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 63.36% | 36.64% |
| All Indica | 790 | 83.16% | 16.84% |
| All Japonica | 480 | 29.38% | 70.62% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 82.84% | 17.16% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 333 | 12.91% | 87.09% |
| Tropical Japonica | 87 | 83.91% | 16.09% |
| Japonica Intermediate | 60 | 41.67% | 58.33% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218677575 | G->A | LOC_Os02g31190(LOC_Os02g31190.1) | SNPs that introduce stop codons |