Detailed information of SNP:
|
SNP ID:
sf0218697620(Gbrowse)
Chromosome: chr02 Position: 18697620 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 68.74% | 31.26% |
| All Indica | 756 | 48.68% | 51.32% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 362 | 62.43% | 37.57% |
| Indica II | 198 | 39.39% | 60.61% |
| Indica Intermediate | 196 | 32.65% | 67.35% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218697620 | G->A | INTERGENIC | None |