Detailed information of SNP:
|
SNP ID:
sf0218730432(Gbrowse)
Chromosome: chr02 Position: 18730432 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.71% | 33.29% |
| All Indica | 796 | 46.23% | 53.77% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 373 | 60.86% | 39.14% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218730432 | A->T | INTERGENIC | None |