Detailed information of SNP:
|
SNP ID:
sf0218741953(Gbrowse)
Chromosome: chr02 Position: 18741953 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 95.47% | 4.53% |
| All Indica | 753 | 91.90% | 8.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 338 | 87.28% | 12.72% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218741953 | C->A | LOC_Os02g31280(LOC_Os02g31280.1) | Non-Synonymous SNP |