Detailed information of SNP:
|
SNP ID:
sf0218781607(Gbrowse)
Chromosome: chr02 Position: 18781607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 68.04% | 31.96% |
| All Indica | 785 | 48.54% | 51.46% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 369 | 62.87% | 37.13% |
| Indica II | 208 | 40.38% | 59.62% |
| Indica Intermediate | 208 | 31.25% | 68.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218781607 | G->A | INTERGENIC | None |