Detailed information of SNP:
|
SNP ID:
sf0218790697(Gbrowse)
Chromosome: chr02 Position: 18790697 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.46% | 46.54% |
| All Indica | 798 | 24.94% | 75.06% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 27.01% | 72.99% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 9.95% | 90.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218790697 | C->T | INTERGENIC | None |