Detailed information of SNP:
|
SNP ID:
sf0218805943(Gbrowse)
Chromosome: chr02 Position: 18805943 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 91.01% | 8.99% |
| All Indica | 787 | 87.42% | 12.58% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 367 | 84.47% | 15.53% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218805943 | G->T | INTERGENIC | None |