Detailed information of SNP:
|
SNP ID:
sf0218828121(Gbrowse)
Chromosome: chr02 Position: 18828121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 76.28% | 23.72% |
| All Indica | 794 | 81.99% | 18.01% |
| All Japonica | 470 | 68.09% | 31.91% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 313 | 57.19% | 42.81% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218828121 | C->T | INTERGENIC | None |