Detailed information of SNP:
|
SNP ID:
sf0218838052(Gbrowse)
Chromosome: chr02 Position: 18838052 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.90% | 8.10% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 490 | 80.61% | 19.39% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 22.73% | 77.27% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218838052 | G->A | INTERGENIC | None |